AuthorHan, G. Z.
AffiliationJiangsu Key Laboratory for Microbes and Functional Genomics, Jiangsu Engineering and Technology Research Center for Microbiology, College of Life Sciences, Nanjing Normal University
Department of Ecology and Evolutionary Biology, University of Arizona
MetadataShow full item record
CitationHan Retrovirology (2015) 12:34 DOI 10.1186/s12977-015-0158-4
Rights© 2015 Han; licensee BioMed Central. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0)
Collection InformationThis item is part of the UA Faculty Publications collection. For more information this item or other items in the UA Campus Repository, contact the University of Arizona Libraries at email@example.com.
AbstractBACKGROUND: Retroviruses infect a wide range of vertebrates. However, little is known about the diversity of retroviruses in basal vertebrates. Endogenous retrovirus (ERV) provides a valuable resource to study the ecology and evolution of retrovirus. FINDINGS: I performed a genome-scale screening for ERVs in the elephant shark (Callorhinchus milii) and identified three complete or nearly complete ERVs and many short ERV fragments. I designate these retroviral elements "C. milli ERVs" (CmiERVs). Phylogenetic analysis shows that the CmiERVs form three distinct lineages. The genome invasions by these retroviruses are estimated to take place more than 50 million years ago. CONCLUSIONS: My results reveal the extensive retroviral diversity in the elephant shark. Diverse retroviruses appear to have been associated with cartilaginous fishes for millions of years. These findings have important implications in understanding the diversity and evolution of retroviruses.
PubMed Central IDPMC4422223
VersionFinal published version
- Identification and characterization of diverse groups of endogenous retroviruses in felids.
- Authors: Mata H, Gongora J, Eizirik E, Alves BM, Soares MA, Ravazzolo AP
- Issue date: 2015 Mar 15
- Endogenous retroviruses of non-avian/mammalian vertebrates illuminate diversity and deep history of retroviruses.
- Authors: Xu X, Zhao H, Gong Z, Han GZ
- Issue date: 2018 Jun
- Distribution, Diversity, and Evolution of Endogenous Retroviruses in Perissodactyl Genomes.
- Authors: Zhu H, Gifford RJ, Murcia PR
- Issue date: 2018 Dec 1
- Surveys of endogenous retroviruses (ERVs) in the freshwater crocodile (Crocodylus johnstoni) suggest that ERVs in Crocodylus spp. vary between species.
- Authors: Chong AY, Kjeldsen SR, Gongora J
- Issue date: 2015 Apr
- Pan-vertebrate comparative genomics unmasks retrovirus macroevolution.
- Authors: Hayward A, Cornwallis CK, Jern P
- Issue date: 2015 Jan 13