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    Developing a vocabulary and ontology for modeling insect natural history data: example data, use cases, and competency questions

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    BDJ_article_33303.pdf
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    Final Published version
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    Author
    Stucky, Brian
    Balhoff, James
    Barve, Narayani
    Barve, Vijay
    Brenskelle, Laura
    Brush, Matthew
    Dahlem, Gregory
    Gilbert, James
    Kawahara, Akito
    Keller, Oliver
    Lucky, Andrea
    Mayhew, Peter
    Plotkin, David
    Seltmann, Katja
    Talamas, Elijah
    Vaidya, Gaurav
    Walls, Ramona
    Yoder, Matt
    Zhang, Guanyang
    Guralnick, Rob
    Stucky, Brian
    Balhoff, James
    Barve, Narayani
    Barve, Vijay
    Brenskelle, Laura
    Brush, Matthew
    Dahlem, Gregory
    Gilbert, James
    Kawahara, Akito
    Keller, Oliver
    Lucky, Andrea
    Mayhew, Peter
    Plotkin, David
    Seltmann, Katja
    Talamas, Elijah
    Vaidya, Gaurav
    Walls, Ramona
    Yoder, Matt
    Zhang, Guanyang
    Guralnick, Rob
    Stucky, Brian
    Balhoff, James
    Barve, Narayani
    Barve, Vijay
    Brenskelle, Laura
    Brush, Matthew
    Dahlem, Gregory
    Gilbert, James
    Kawahara, Akito
    Keller, Oliver
    Lucky, Andrea
    Mayhew, Peter
    Plotkin, David
    Seltmann, Katja
    Seltmann, Katja
    Talamas, Elijah
    Vaidya, Gaurav
    Walls, Ramona
    Yoder, Matt
    Zhang, Guanyang
    Guralnick, Rob
    Stucky, Brian
    Balhoff, James
    Barve, Narayani
    Barve, Vijay
    Brenskelle, Laura
    Brush, Matthew
    Dahlem, Gregory
    Gilbert, James
    Kawahara, Akito
    Keller, Oliver
    Lucky, Andrea
    Mayhew, Peter
    Plotkin, David
    Seltmann, Katja
    Seltmann, Katja
    Talamas, Elijah
    Vaidya, Gaurav
    Walls, Ramona
    Yoder, Matt
    Zhang, Guanyang
    Guralnick, Rob
    Stucky, Brian
    Balhoff, James
    Barve, Narayani
    Barve, Vijay
    Brenskelle, Laura
    Brush, Matthew
    Dahlem, Gregory
    Gilbert, James
    Kawahara, Akito
    Keller, Oliver
    Lucky, Andrea
    Mayhew, Peter
    Plotkin, David
    Seltmann, Katja
    Seltmann, Katja
    Talamas, Elijah
    Vaidya, Gaurav
    Walls, Ramona
    Show allShow less
    Affiliation
    Univ Arizona, Bio5
    Univ Arizona, CyVerse
    Issue Date
    2019-03-13
    Keywords
    insects
    natural history
    biodiversity informatics
    ontology
    data modeling
    
    Metadata
    Show full item record
    Publisher
    PENSOFT PUBL
    Citation
    Stucky B, Balhoff J, Barve N, Barve V, Brenskelle L, Brush M, Dahlem G, Gilbert J, Kawahara A, Keller O, Lucky A, Mayhew P, Plotkin D, Seltmann K, Talamas E, Vaidya G, Walls R, Yoder M, Zhang G, Guralnick R (2019) Developing a vocabulary and ontology for modeling insect natural history data: example data, use cases, and competency questions. Biodiversity Data Journal 7: e33303. https://doi.org/10.3897/BDJ.7.e33303
    Journal
    BIODIVERSITY DATA JOURNAL
    Rights
    © Stucky B et al. This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0).
    Collection Information
    This item from the UA Faculty Publications collection is made available by the University of Arizona with support from the University of Arizona Libraries. If you have questions, please contact us at repository@u.library.arizona.edu.
    Abstract
    Insects are possibly the most taxonomically and ecologically diverse class of multicellular organisms on Earth. Consequently, they provide nearly unlimited opportunities to develop and test ecological and evolutionary hypotheses. Currently, however, large-scale studies of insect ecology, behavior, and trait evolution are impeded by the difficulty in obtaining and analyzing data derived from natural history observations of insects. These data are typically highly heterogeneous and widely scattered among many sources, which makes developing robust information systems to aggregate and disseminate them a significant challenge. As a step towards this goal, we report initial results of a new effort to develop a standardized vocabulary and ontology for insect natural history data. In particular, we describe a new database of representative insect natural history data derived from multiple sources (but focused on data from specimens in biological collections), an analysis of the abstract conceptual areas required for a comprehensive ontology of insect natural history data, and a database of use cases and competency questions to guide the development of data systems for insect natural history data. We also discuss data modeling and technology-related challenges that must be overcome to implement robust integration of insect natural history data.
    Note
    Open access journal
    ISSN
    1314-2828
    1314-2836
    DOI
    10.3897/BDJ.7.e33303
    10.3897/BDJ.7.e33303.figure1
    10.3897/BDJ.7.e33303.suppl1
    10.3897/BDJ.7.e33303.suppl2
    10.3897/BDJ.7.e33303.suppl3
    Version
    Final published version
    Sponsors
    National Science Foundation Postdoctoral Research Fellowship in Biology [1612335]; University of Florida Informatics Institute fellowship; iDigBio workshop grant
    Additional Links
    https://bdj.pensoft.net/article/33303/
    https://bdj.pensoft.net/article/33303/element/2/4993777/
    https://bdj.pensoft.net/article/33303/element/5/4994016/
    https://bdj.pensoft.net/article/33303/element/5/4994017/
    https://bdj.pensoft.net/article/33303/element/5/4994468/
    ae974a485f413a2113503eed53cd6c53
    10.3897/BDJ.7.e33303
    Scopus Count
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    UA Faculty Publications

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