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T-BAS Version 2.1: Tree-Based Alignment Selector Toolkit for Evolutionary Placement of DNA Sequences and Viewing Alignments and Specimen Metadata on Curated and Custom Trees

dc.contributor.authorCarbone, Ignazio
dc.contributor.authorWhite, James B
dc.contributor.authorMiadlikowska, Jolanta
dc.contributor.authorArnold, A Elizabeth
dc.contributor.authorMiller, Mark A
dc.contributor.authorMagain, Nicolas
dc.contributor.authorU'Ren, Jana M
dc.contributor.authorLutzoni, François
dc.date.accessioned2019-08-22T23:05:45Z
dc.date.available2019-08-22T23:05:45Z
dc.date.issued2019-07-18
dc.identifier.citationCarbone I, White JB, Miadlikowska J, Arnold AE, Miller MA, Magain N, U'Ren JM, Lutzoni F. 2019. T-BAS version 2.1: Tree-Based Alignment Selector toolkit for evolutionary placement of DNA sequences and viewing alignments and specimen metadata on curated and custom trees. Microbiol Resour Announc 8:e00328-19. https://doi.org/10.1128/ MRA.00328-19.en_US
dc.identifier.issn2576-098X
dc.identifier.pmid31320426
dc.identifier.doi10.1128/MRA.00328-19
dc.identifier.urihttp://hdl.handle.net/10150/633954
dc.description.abstractThe Tree-Based Alignment Selector (T-BAS) toolkit combines phylogenetic-based placement of DNA sequences with alignment and specimen metadata visualization tools in an integrative pipeline for analyzing microbial biodiversity. The release of T-BAS version 2.1 makes available reference phylogenies, supports multilocus sequence placements and permits uploading and downloading trees, alignments, and specimen metadata.en_US
dc.description.sponsorshipNational Science Foundation (NSF) Genealogy of Life (GoLife) program [DEB-1541418, DEB-1541496, DEB-1541548]; National Institutes of Health (NIH) [5 R01 GM1264635]; NSF [DBI-1759844]; U.S. National Science Foundation [TG-DEB090011]en_US
dc.language.isoenen_US
dc.publisherMICROBIOLOGY RESOURCE ANNOUNCEMENTSen_US
dc.rightsCopyright © 2019 Carbone et al. This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.en_US
dc.rights.urihttps://creativecommons.org/licenses/by/4.0/
dc.titleT-BAS Version 2.1: Tree-Based Alignment Selector Toolkit for Evolutionary Placement of DNA Sequences and Viewing Alignments and Specimen Metadata on Curated and Custom Treesen_US
dc.typeArticleen_US
dc.contributor.departmentUniv Arizona, Dept Biosyst Engnen_US
dc.contributor.departmentUniv Arizona, Sch Plant Scien_US
dc.contributor.departmentUniv Arizona, Dept Ecol & Evolutionary Biolen_US
dc.identifier.journalAMER SOC MICROBIOLOGYen_US
dc.description.noteOpen access journalen_US
dc.description.collectioninformationThis item from the UA Faculty Publications collection is made available by the University of Arizona with support from the University of Arizona Libraries. If you have questions, please contact us at repository@u.library.arizona.edu.en_US
dc.eprint.versionFinal published versionen_US
dc.source.journaltitleMicrobiology resource announcements
refterms.dateFOA2019-08-22T23:05:46Z


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Copyright © 2019 Carbone et al. This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.
Except where otherwise noted, this item's license is described as Copyright © 2019 Carbone et al. This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.