Microbial community dissimilarity for source tracking with application in forensic studies
Affiliation
Univ Arizona, Interdisciplinary Program Stat & Data SciUniv Arizona, Dept Biosyst Engn
Univ Arizona, Dept Epidemiol & Biostat
Issue Date
2020-07-23
Metadata
Show full item recordPublisher
PUBLIC LIBRARY SCIENCECitation
Carter, K. M., Lu, M., Luo, Q., Jiang, H., & An, L. (2020). Microbial community dissimilarity for source tracking with application in forensic studies. PloS one, 15(7), e0236082.Journal
PLOS ONERights
© 2020 Carteret al. This is an open access article distributed under the terms of the Creative Commons Attribution License.Collection Information
This item from the UA Faculty Publications collection is made available by the University of Arizona with support from the University of Arizona Libraries. If you have questions, please contact us at repository@u.library.arizona.edu.Abstract
Microbial source-tracking is a useful tool for trace evidence analysis in Forensics. Community-wide massively parallel sequencing profiles can bypass the need for satellite microbes or marker sets, which are unreliable when handling unstable samples. We propose a novel method utilizing Aitchison distance to select important suspects/sources, and then integrate it with existing algorithms in source tracking to estimate the proportions of microbial sample coming from important suspects/sources. A series of comprehensive simulation studies show that the proposed method is capable of accurate selection and therefore improves the performance of current methods such as Bayesian SourceTracker and FEAST in the presence of noise microbial sources.Note
Open access journalISSN
1932-6203PubMed ID
32702000Version
Final published versionae974a485f413a2113503eed53cd6c53
10.1371/journal.pone.0236082
Scopus Count
Collections
Except where otherwise noted, this item's license is described as © 2020 Carteret al. This is an open access article distributed under the terms of the Creative Commons Attribution License.
Related articles
- Source identification of antibiotic resistance genes in a peri-urban river using novel crAssphage marker genes and metagenomic signatures.
- Authors: Chen H, Bai X, Li Y, Jing L, Chen R, Teng Y
- Issue date: 2019 Dec 15
- Microbiome Tools for Forensic Science.
- Authors: Metcalf JL, Xu ZZ, Bouslimani A, Dorrestein P, Carter DO, Knight R
- Issue date: 2017 Sep
- Influence of Library Composition on SourceTracker Predictions for Community-Based Microbial Source Tracking.
- Authors: Brown CM, Mathai PP, Loesekann T, Staley C, Sadowsky MJ
- Issue date: 2019 Jan 2
- SNV-FEAST: microbial source tracking with single nucleotide variants.
- Authors: Briscoe L, Halperin E, Garud NR
- Issue date: 2023 Apr 30