Genome Sequences of Allochromatium palmeri and Allochromatium humboldtianum Expand the Allochromatium Family Tree of Purple Sulfur Photosynthetic Bacteria within the Gammaproteobacteria and Further Refine the Genus
Name:
Microbiology_2020_Kyndt_e00774.pdf
Size:
287.1Kb
Format:
PDF
Description:
Final Published Version
Publisher
AMER SOC MICROBIOLOGYCitation
Kyndt, J. A., & Meyer, T. E. (2020). Genome Sequences of Allochromatium palmeri and Allochromatium humboldtianum Expand the Allochromatium Family Tree of Purple Sulfur Photosynthetic Bacteria within the Gammaproteobacteria and Further Refine the Genus. Microbiology Resource Announcements, 9(33).Rights
© 2020 Kyndt and Meyer. This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.Collection Information
This item from the UA Faculty Publications collection is made available by the University of Arizona with support from the University of Arizona Libraries. If you have questions, please contact us at repository@u.library.arizona.edu.Abstract
New genomes of two Allochromatium strains were sequenced. Whole-genome and average nucleotide identity based on BLAST (ANIb) comparisons show that Allochromatium humboldtianum is the nearest relative of Allochromatium vinosum (ANIb, 91.5%), while both Allochromatium palmeri and Thermochromanum tepidun, are more distantly related (ANIb, <87%). These new sequences firmly establish the position of Allochromatium on the family tree.Note
Open access journalISSN
2576-098XPubMed ID
32817156Version
Final published versionae974a485f413a2113503eed53cd6c53
10.1128/MRA.00774-20
Scopus Count
Collections
Except where otherwise noted, this item's license is described as © 2020 Kyndt and Meyer. This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.
Related articles
- Allochromatium tepidum, sp. nov., a hot spring species of purple sulfur bacteria.
- Authors: Madigan MT, Absher JN, Mayers JE, Asao M, Jung DO, Bender KS, Kempher ML, Hayward MK, Sanguedolce SA, Brown AC, Takaichi S, Kurokawa K, Toyoda A, Mori H, Tsukatani Y, Wang-Otomo ZY, Ward DM, Sattley WM
- Issue date: 2022 Jan 4
- Complete genome of the thermophilic purple sulfur Bacterium Thermochromatium tepidum compared to Allochromatium vinosum and other Chromatiaceae.
- Authors: Sattley WM, Swingley WD, Burchell BM, Dewey ED, Hayward MK, Renbarger TL, Shaffer KN, Stokes LM, Gurbani SA, Kujawa CM, Nuccio DA, Schladweiler J, Touchman JW, Wang-Otomo ZY, Blankenship RE, Madigan MT
- Issue date: 2022 Jan
- Allochromatium humboldtianum sp. nov., isolated from soft coastal sediments.
- Authors: Serrano W, Schrübbers J, Amann R, Fischer U
- Issue date: 2015 Sep
- Complete genome sequence of Allochromatium vinosum DSM 180(T).
- Authors: Weissgerber T, Zigann R, Bruce D, Chang YJ, Detter JC, Han C, Hauser L, Jeffries CD, Land M, Munk AC, Tapia R, Dahl C
- Issue date: 2011 Dec 31
- Phylogenetic relationships among the Chromatiaceae, their taxonomic reclassification and description of the new genera Allochromatium, Halochromatium, Isochromatium, Marichromatium, Thiococcus, Thiohalocapsa and Thermochromatium.
- Authors: Imhoff JF, Süling J, Petri R
- Issue date: 1998 Oct

