dadi.CUDA: Accelerating Population Genetics Inference with Graphics Processing Units
dc.contributor.author | Gutenkunst, Ryan N | |
dc.date.accessioned | 2021-06-11T02:21:51Z | |
dc.date.available | 2021-06-11T02:21:51Z | |
dc.date.issued | 2021 | |
dc.identifier.citation | Gutenkunst, R. N. (2021). Dadi.CUDA: Accelerating Population Genetics Inference with Graphics Processing Units. Molecular Biology and Evolution, 38(5), 2177–2178. | en_US |
dc.identifier.pmid | 33480999 | |
dc.identifier.doi | 10.1093/molbev/msaa305 | |
dc.identifier.uri | http://hdl.handle.net/10150/659873 | |
dc.description.abstract | dadi is a popular but computationally intensive program for inferring models of demographic history and natural selection from population genetic data. I show that running dadi on a Graphics Processing Unit can dramatically speed computation compared with the CPU implementation, with minimal user burden. Motivated by this speed increase, I also extended dadi to four- and five-population models. This functionality is available in dadi version 2.1.0, https://bitbucket.org/gutenkunstlab/dadi/. © 2021 The Author(s). | en_US |
dc.language.iso | en | en_US |
dc.publisher | Oxford University Press | en_US |
dc.rights | © The Author(s) 2021. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/ licenses/by/4.0/). | en_US |
dc.rights.uri | https://creativecommons.org/licenses/by/4.0/ | en_US |
dc.subject | GPU Computing | en_US |
dc.subject | dadi | en_US |
dc.subject | Demographic history | en_US |
dc.subject | Population Genetics | en_US |
dc.title | dadi.CUDA: Accelerating Population Genetics Inference with Graphics Processing Units | en_US |
dc.type | Article | en_US |
dc.identifier.eissn | 1537-1719 | |
dc.contributor.department | Department of Molecular and Cellular Biology, University of Arizona | en_US |
dc.identifier.journal | Molecular Biology and Evolution | en_US |
dc.description.note | Open access article | en_US |
dc.description.collectioninformation | This item from the UA Faculty Publications collection is made available by the University of Arizona with support from the University of Arizona Libraries. If you have questions, please contact us at repository@u.library.arizona.edu. | en_US |
dc.eprint.version | Final published version | en_US |
dc.source.journaltitle | Molecular biology and evolution | |
dc.source.volume | 38 | |
dc.source.issue | 5 | |
dc.source.beginpage | 2177 | |
dc.source.endpage | 2178 | |
refterms.dateFOA | 2021-06-11T02:21:51Z | |
dc.source.country | United States | |
dc.source.country | United States |