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    A transformer-based diffusion probabilistic model for heart rate and blood pressure forecasting in Intensive Care Unit

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    Author
    Chang, Ping
    Li, Huayu
    Quan, Stuart F
    Lu, Shuyang
    Wung, Shu-Fen
    Roveda, Janet
    Li, Ao
    Affiliation
    Department of Electrical & Computer Engineering, The University of Arizona
    Asthma and Airway Disease Research Center, College of Medicine, The University of Arizona
    Bio5 Institute, The University of Arizona
    College of Nursing, The University of Arizona
    Issue Date
    2024-02-08
    Keywords
    Deep Learning
    ICU
    Sparse data
    Time series forecasting
    Vital signs
    
    Metadata
    Show full item record
    Publisher
    Elsevier Ireland Ltd
    Citation
    Chang, P., Li, H., Quan, S. F., Lu, S., Wung, S. F., Roveda, J., & Li, A. (2024). A Transformer-based Diffusion Probabilistic Model for Heart Rate and Blood Pressure Forecasting in Intensive Care Unit. Computer Methods and Programs in Biomedicine, 108060.
    Journal
    Computer methods and programs in biomedicine
    Rights
    © 2024 Elsevier B.V. All rights reserved.
    Collection Information
    This item from the UA Faculty Publications collection is made available by the University of Arizona with support from the University of Arizona Libraries. If you have questions, please contact us at repository@u.library.arizona.edu.
    Abstract
    Background and Objective: Vital sign monitoring in the Intensive Care Unit (ICU) is crucial for enabling prompt interventions for patients. This underscores the need for an accurate predictive system. Therefore, this study proposes a novel deep learning approach for forecasting Heart Rate (HR), Systolic Blood Pressure (SBP), and Diastolic Blood Pressure (DBP) in the ICU. Methods: We extracted 24,886 ICU stays from the MIMIC-III database which contains data from over 46 thousand patients, to train and test the model. The model proposed in this study, Transformer-based Diffusion Probabilistic Model for Sparse Time Series Forecasting (TDSTF), merges Transformer and diffusion models to forecast vital signs. The TDSTF model showed state-of-the-art performance in predicting vital signs in the ICU, outperforming other models' ability to predict distributions of vital signs and being more computationally efficient. The code is available at https://github.com/PingChang818/TDSTF. Results: The results of the study showed that TDSTF achieved a Standardized Average Continuous Ranked Probability Score (SACRPS) of 0.4438 and a Mean Squared Error (MSE) of 0.4168, an improvement of 18.9% and 34.3% over the best baseline model, respectively. The inference speed of TDSTF is more than 17 times faster than the best baseline model. Conclusion: TDSTF is an effective and efficient solution for forecasting vital signs in the ICU, and it shows a significant improvement compared to other models in the field.
    Note
    12 month embargo; first published 8 February 2024
    EISSN
    1872-7565
    PubMed ID
    38350189
    DOI
    10.1016/j.cmpb.2024.108060
    Version
    Final accepted manuscript
    ae974a485f413a2113503eed53cd6c53
    10.1016/j.cmpb.2024.108060
    Scopus Count
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    UA Faculty Publications

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