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dc.contributor.authorAdegbola, Raphael O
dc.contributor.authorKeith, Cory V
dc.contributor.authorGutierrez, Osman
dc.contributor.authorGoenaga, Ricardo
dc.contributor.authorBrown, Judith K
dc.date.accessioned2024-05-17T17:49:14Z
dc.date.available2024-05-17T17:49:14Z
dc.date.issued2024-03-23
dc.identifier.citationAdegbola, R.O., Keith, C.V., Gutierrez, O. et al. Complete genome characterization of cacao leafroll virus, a newly described cacao-infecting polerovirus. Arch Virol 169, 83 (2024). https://doi.org/10.1007/s00705-024-06013-7en_US
dc.identifier.pmid38521887
dc.identifier.doi10.1007/s00705-024-06013-7
dc.identifier.urihttp://hdl.handle.net/10150/672378
dc.description.abstractThe complete genome sequence of cacao leafroll virus (CaLRV; family Solemoviridae, genus Polerovirus) was determined by high-throughput sequencing of total RNA isolated from symptomatic cacao Theobroma cacao L. plants (n = 4). The CaLRV genome sequences ranged from 5,976 to 5,997 nucleotides (nt) in length and contained seven open reading frames (ORFs). Nucleotide and amino acid (aa) sequence comparisons showed that, among selected well-characterized poleroviruses, the CaLRV genome shared the highest nt sequence identity of 62% with that of potato leafroll virus (PLRV, NC_076505). A comparison of the predicted aa sequence of the CaLRV coat protein indicated that cotton leafroll dwarf virus (CLRDV, NC_014545) and melon aphid-borne yellows virus (MABYV, NC_010809) were the closest relatives, sharing 57% aa sequence identity. Bayesian phylogenetic analysis based on complete genome sequences showed that CaLRV grouped with well-characterized poleroviruses that cause diseases of cereal and vegetable crops. During the course of publishing this work, the nearly complete genome sequence of a member of the same polerovirus species, referred to as “cacao polerovirus” (OR605721), with which CaLRV shares 99% nt sequence identity, was reported.en_US
dc.language.isoenen_US
dc.publisherSpringeren_US
dc.rights© 2024. The Author(s), under exclusive licence to Springer-Verlag GmbH Austria, part of Springer Nature.en_US
dc.rights.urihttp://rightsstatements.org/vocab/InC/1.0/en_US
dc.titleComplete genome characterization of cacao leafroll virus, a newly described cacao-infecting polerovirusen_US
dc.typeArticleen_US
dc.identifier.eissn1432-8798
dc.contributor.departmentSchool of Plant Sciences, The University of Arizonaen_US
dc.identifier.journalArchives of virologyen_US
dc.description.note12 month embargo; first published 23 March 2024en_US
dc.description.collectioninformationThis item from the UA Faculty Publications collection is made available by the University of Arizona with support from the University of Arizona Libraries. If you have questions, please contact us at repository@u.library.arizona.edu.en_US
dc.eprint.versionFinal accepted manuscripten_US
dc.source.journaltitleArchives of virology
dc.source.volume169
dc.source.issue4
dc.source.beginpage83
dc.source.endpage
dc.source.countryAustria


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