Multi-ancestry genome-wide association analyses improve resolution of genes and pathways influencing lung function and chronic obstructive pulmonary disease risk
Name:
s41588-023-01314-0.pdf
Size:
3.056Mb
Format:
PDF
Description:
Final Published Version
Author
Shrine, N.Izquierdo, A.G.
Chen, J.
Packer, R.
Hall, R.J.
Guyatt, A.L.
Batini, C.
Thompson, R.J.
Pavuluri, C.
Malik, V.
Hobbs, B.D.
Moll, M.
Kim, W.
Tal-Singer, R.
Bakke, P.
Fawcett, K.A.
John, C.
Coley, K.
Piga, N.N.
Pozarickij, A.
Lin, K.
Millwood, I.Y.
Chen, Z.
Li, L.
Wijnant, S.R.A.
Lahousse, L.
Brusselle, G.
Uitterlinden, A.G.
Manichaikul, A.
Oelsner, E.C.
Rich, S.S.
Barr, R.G.
Kerr, S.M.
Vitart, V.
Brown, M.R.
Wielscher, M.
Imboden, M.
Jeong, A.
Bartz, T.M.
Gharib, S.A.
Flexeder, C.
Karrasch, S.
Gieger, C.
Peters, A.
Stubbe, B.
Hu, X.
Ortega, V.E.
Meyers, D.A.
Bleecker, E.R.
Gabriel, S.B.
Gupta, N.
Smith, A.V.
Luan, J.
Zhao, J.-H.
Hansen, A.F.
Langhammer, A.
Willer, C.
Bhatta, L.
Porteous, D.
Smith, B.H.
Campbell, A.
Sofer, T.
Lee, J.
Daviglus, M.L.
Yu, B.
Lim, E.
Xu, H.
O’Connor, G.T.
Thareja, G.
Albagha, O.M.E.
Ismail, S.I.
Al-Muftah, W.
Badji, R.
Mbarek, H.
Darwish, D.
Fadl, T.
Yasin, H.
Ennaifar, M.
Abdellatif, R.
Alkuwari, F.
Alvi, M.
Al-Sarraj, Y.
Saad, C.
Althani, A.
Fethnou, E.
Qafoud, F.
Alkhayat, E.
Afifi, N.
Tomei, S.
Liu, W.
Lorenz, S.
Syed, N.
Almabrazi, H.
Vempalli, F.R.
Temanni, R.
Saqri, T.A.
Khatib, M.
Hamza, M.
Zaid, T.A.
El, Khouly, A.
Pathare, T.
Poolat, S.
Al-Ali, R.
Al-Khodor, S.
Alshafai, M.
Badii, R.
Chouchane, L.
Estivill, X.
Fakhro, K.
Mokrab, Y.
Puthen, J.V.
Tatari, Z.
Suhre, K.
Granell, R.
Faquih, T.O.
Hiemstra, P.S.
Slats, A.M.
Mullin, B.H.
Hui, J.
James, A.
Beilby, J.
Patasova, K.
Hysi, P.
Koskela, J.T.
Wyss, A.B.
Jin, J.
Sikdar, S.
Lee, M.
May-Wilson, S.
Pirastu, N.
Kentistou, K.A.
Joshi, P.K.
Timmers, P.R.H.J.
Williams, A.T.
Free, R.C.
Wang, X.

Morrison, J.L.
Gilliland, F.D.
Chen, Z.
Wang, C.A.
Foong, R.E.
Harris, S.E.
Taylor, A.
Redmond, P.
Cook, J.P.
Mahajan, A.
Lind, L.
Palviainen, T.
Lehtimäki, T.
Raitakari, O.T.
Kaprio, J.
Rantanen, T.
Pietiläinen, K.H.
Cox, S.R.
Pennell, C.E.
Hall, G.L.
Gauderman, W.J.
Brightling, C.
Wilson, J.F.
Vasankari, T.
Laitinen, T.
Salomaa, V.
Mook-Kanamori, D.O.
Timpson, N.J.
Zeggini, E.
Dupuis, J.
Hayward, C.
Brumpton, B.
Langenberg, C.
Weiss, S.
Homuth, G.
Schmidt, C.O.
Probst-Hensch, N.
Jarvelin, M.-R.
Morrison, A.C.
Polasek, O.
Rudan, I.
Lee, J.-H.
Sayers, I.
Rawlins, E.L.
Dudbridge, F.
Silverman, E.K.
Strachan, D.P.
Walters, R.G.
Morris, A.P.
London, S.J.
Cho, M.H.
Wain, L.V.
Hall, I.P.
Tobin, M.D.
Affiliation
Department of Medicine, University of ArizonaIssue Date
2023-03-13
Metadata
Show full item recordPublisher
Nature ResearchCitation
Shrine, N., Izquierdo, A.G., Chen, J. et al. Multi-ancestry genome-wide association analyses improve resolution of genes and pathways influencing lung function and chronic obstructive pulmonary disease risk. Nat Genet 55, 410–422 (2023). https://doi.org/10.1038/s41588-023-01314-0Journal
Nature GeneticsRights
© The Author(s) 2023, corrected publication 2023. This article is licensed under a Creative Commons Attribution 4.0 International License.Collection Information
This item from the UA Faculty Publications collection is made available by the University of Arizona with support from the University of Arizona Libraries. If you have questions, please contact us at repository@u.library.arizona.edu.Abstract
Lung-function impairment underlies chronic obstructive pulmonary disease (COPD) and predicts mortality. In the largest multi-ancestry genome-wide association meta-analysis of lung function to date, comprising 580,869 participants, we identified 1,020 independent association signals implicating 559 genes supported by ≥2 criteria from a systematic variant-to-gene mapping framework. These genes were enriched in 29 pathways. Individual variants showed heterogeneity across ancestries, age and smoking groups, and collectively as a genetic risk score showed strong association with COPD across ancestry groups. We undertook phenome-wide association studies for selected associated variants as well as trait and pathway-specific genetic risk scores to infer possible consequences of intervening in pathways underlying lung function. We highlight new putative causal variants, genes, proteins and pathways, including those targeted by existing drugs. These findings bring us closer to understanding the mechanisms underlying lung function and COPD, and should inform functional genomics experiments and potentially future COPD therapies. © 2023, The Author(s).Note
Open access articleISSN
1061-4036PubMed ID
36914875Version
Final Published Versionae974a485f413a2113503eed53cd6c53
10.1038/s41588-023-01314-0
Scopus Count
Collections
Except where otherwise noted, this item's license is described as © The Author(s) 2023, corrected publication 2023. This article is licensed under a Creative Commons Attribution 4.0 International License.
Related articles
- New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.
- Authors: Shrine N, Guyatt AL, Erzurumluoglu AM, Jackson VE, Hobbs BD, Melbourne CA, Batini C, Fawcett KA, Song K, Sakornsakolpat P, Li X, Boxall R, Reeve NF, Obeidat M, Zhao JH, Wielscher M, Weiss S, Kentistou KA, Cook JP, Sun BB, Zhou J, Hui J, Karrasch S, Imboden M, Harris SE, Marten J, Enroth S, Kerr SM, Surakka I, Vitart V, Lehtimäki T, Allen RJ, Bakke PS, Beaty TH, Bleecker ER, Bossé Y, Brandsma CA, Chen Z, Crapo JD, Danesh J, DeMeo DL, Dudbridge F, Ewert R, Gieger C, Gulsvik A, Hansell AL, Hao K, Hoffman JD, Hokanson JE, Homuth G, Joshi PK, Joubert P, Langenberg C, Li X, Li L, Lin K, Lind L, Locantore N, Luan J, Mahajan A, Maranville JC, Murray A, Nickle DC, Packer R, Parker MM, Paynton ML, Porteous DJ, Prokopenko D, Qiao D, Rawal R, Runz H, Sayers I, Sin DD, Smith BH, Soler Artigas M, Sparrow D, Tal-Singer R, Timmers PRHJ, Van den Berge M, Whittaker JC, Woodruff PG, Yerges-Armstrong LM, Troyanskaya OG, Raitakari OT, Kähönen M, Polašek O, Gyllensten U, Rudan I, Deary IJ, Probst-Hensch NM, Schulz H, James AL, Wilson JF, Stubbe B, Zeggini E, Jarvelin MR, Wareham N, Silverman EK, Hayward C, Morris AP, Butterworth AS, Scott RA, Walters RG, Meyers DA, Cho MH, Strachan DP, Hall IP, Tobin MD, Wain LV, Understanding Society Scientific Group
- Issue date: 2019 Mar
- Molecular mechanisms underlying variations in lung function: a systems genetics analysis.
- Authors: Obeidat M, Hao K, Bossé Y, Nickle DC, Nie Y, Postma DS, Laviolette M, Sandford AJ, Daley DD, Hogg JC, Elliott WM, Fishbane N, Timens W, Hysi PG, Kaprio J, Wilson JF, Hui J, Rawal R, Schulz H, Stubbe B, Hayward C, Polasek O, Järvelin MR, Zhao JH, Jarvis D, Kähönen M, Franceschini N, North KE, Loth DW, Brusselle GG, Smith AV, Gudnason V, Bartz TM, Wilk JB, O'Connor GT, Cassano PA, Tang W, Wain LV, Soler Artigas M, Gharib SA, Strachan DP, Sin DD, Tobin MD, London SJ, Hall IP, Paré PD
- Issue date: 2015 Oct
- Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.
- Authors: Wain LV, Shrine N, Miller S, Jackson VE, Ntalla I, Soler Artigas M, Billington CK, Kheirallah AK, Allen R, Cook JP, Probert K, Obeidat M, Bossé Y, Hao K, Postma DS, Paré PD, Ramasamy A, UK Brain Expression Consortium (UKBEC), Mägi R, Mihailov E, Reinmaa E, Melén E, O'Connell J, Frangou E, Delaneau O, OxGSK Consortium, Freeman C, Petkova D, McCarthy M, Sayers I, Deloukas P, Hubbard R, Pavord I, Hansell AL, Thomson NC, Zeggini E, Morris AP, Marchini J, Strachan DP, Tobin MD, Hall IP
- Issue date: 2015 Oct
- Common and Rare Variants Genetic Association Analysis of Cigarettes per Day Among Ever-Smokers in Chronic Obstructive Pulmonary Disease Cases and Controls.
- Authors: Lutz SM, Frederiksen B, Begum F, McDonald MN, Cho MH, Hobbs BD, Parker MM, DeMeo DL, Hersh CP, Ehringer MA, Young K, Jiang L, Foreman MG, Kinney GL, Make BJ, Lomas DA, Bakke P, Gulsvik A, Crapo JD, Silverman EK, Beaty TH, Hokanson JE, ECLIPSE and COPDGene Investigators
- Issue date: 2019 May 21
- Sex-Based Genetic Association Study Identifies CELSR1 as a Possible Chronic Obstructive Pulmonary Disease Risk Locus among Women.
- Authors: Hardin M, Cho MH, Sharma S, Glass K, Castaldi PJ, McDonald ML, Aschard H, Senter-Sylvia J, Tantisira K, Weiss ST, Hersh CP, Morrow JD, Lomas D, Agusti A, Bakke P, Gulsvik A, O'Connor GT, Dupuis J, Hokanson J, Crapo JD, Beaty TH, Laird N, Silverman EK, DeMeo DL, COPDGene and Evaluation of COPD Longitudinally to Identify Predictive Surrogate End-Points Investigators
- Issue date: 2017 Mar